STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxlF_2Putative ABC transporter ATP-binding protein YxlF. (245 aa)    
Predicted Functional Partners:
AQR94169.1
ABC-2 family transporter protein.
  
 0.950
AQR93184.1
ABC-2 family transporter protein.
 
 0.877
AQR94439.1
ABC-2 family transporter protein.
  
 0.841
yxdL
ABC transporter ATP-binding protein YxdL.
 
0.651
bceA
Bacitracin export ATP-binding protein BceA.
 
0.649
ybhR
Inner membrane transport permease YbhR.
 
 
 0.620
yycG_2
Sensor histidine kinase YycG.
     
 0.579
AQR93228.1
ABC-2 family transporter protein.
  
 
 0.549
AQR93229.1
ABC-2 family transporter protein.
  
 
 0.549
AQR94750.1
ABC-2 type transporter.
  
 
 0.549
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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