STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsgI_1anti-sigma-I factor RsgI. (379 aa)    
Predicted Functional Partners:
sigI
RNA polymerase sigma factor SigI; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.
 
 
 0.824
AQR94175.1
RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.815
accC_1
Biotin carboxylase.
   
 
 0.545
AQR93057.1
Putative RNA polymerase sigma factor SigI.
  
 
 0.507
AQR94901.1
RNA polymerase factor sigma-70.
  
 
 0.507
sigE_2
RNA polymerase sigma-35 factor precursor.
  
 
 0.507
AQR96110.1
RNA polymerase factor sigma-70.
  
 
 0.507
sigD
RNA polymerase sigma-D factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.507
accD_1
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
 
  0.503
fgs
Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family.
  
  
 0.490
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.