STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94181.1Bacterial regulatory protein, luxR family. (256 aa)    
Predicted Functional Partners:
ycdT_2
Putative diguanylate cyclase YcdT.
  
 
 0.693
ywaC_1
GTP pyrophosphokinase YwaC.
     
 0.670
gloB_2
Hydroxyacylglutathione hydrolase.
 
 
 
 0.626
yflN
Putative metallo-hydrolase YflN.
 
 
 
 0.609
devR
Transcriptional regulatory protein DevR (DosR).
  
 
 0.606
degU_2
Transcriptional regulatory protein DegU.
  
 
 0.606
degU_3
Transcriptional regulatory protein DegU.
  
 
 0.606
gloB_4
Hydroxyacylglutathione hydrolase.
 
 
 
 0.596
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
   
  
 0.566
AQR94864.1
Metallo-beta-lactamase L1 precursor.
   
 
 0.532
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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