Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spoVB_3Stage V sporulation protein B. (498 aa)    
Predicted Functional Partners:
yqfd
Putative stage IV sporulation protein YqfD.
 
   
 0.742
spoIIIAG
SpoIIIAH-like protein.
  
  
 0.643
cotI_3
Spore coat protein I.
  
     0.633
AQR93797.1
Hypothetical protein.
  
     0.633
spoIIIAE
Stage III sporulation protein AE precursor.
  
  
 0.633
spoIIP
Stage II sporulation protein SpoIIP.
  
   
 0.632
cotI_1
Spore coat protein I.
  
     0.629
spoIIE
Stage II sporulation protein E.
  
  
 0.622
AQR92790.1
Hypothetical protein.
  
  
 0.609
yabQ
Spore cortex protein YabQ.
 
  
 0.601
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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