Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR94242.1Hypothetical protein. (128 aa)    
Predicted Functional Partners:
AQR94238.1
Hypothetical protein.
 
     0.892
AQR94233.1
Hypothetical protein.
 
     0.815
AQR94231.1
FHA domain protein.
 
     0.813
AQR94232.1
Hypothetical protein.
 
     0.802
AQR93114.1
Hypothetical protein.
 
     0.789
gpP
Phage late control protein Gpd.
 
     0.787
AQR96128.1
Phage late control protein Gpd.
 
     0.787
AQR96127.1
Hypothetical protein.
  
     0.758
AQR94243.1
Hypothetical protein.
   
 
 0.722
AQR94241.1
Hypothetical protein.
       0.717
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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