Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AQR94260.1Tetratricopeptide repeat protein. (338 aa)    
Predicted Functional Partners:
AQR94261.1
Hypothetical protein.
       0.636
yrrB
TPR repeat-containing protein YrrB.
 
 
 0.624
AQR94262.1
Hypothetical protein.
       0.556
AQR94259.1
Hypothetical protein.
       0.554
AQR96826.1
Bacterial dynamin-like protein.
  
    0.552
ycf3
Photosystem I assembly protein Ycf3.
 
 
 0.548
AQR94230.1
FHA domain protein.
  
  
 0.504
garA
Glycogen accumulation regulator GarA.
  
  
 0.504
fhaB
FHA domain-containing protein FhaB.
  
  
 0.504
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
    0.500
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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