STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
graR_1Response regulator protein GraR. (223 aa)    
Predicted Functional Partners:
graS_1
Sensor histidine kinase GraS.
 
 0.971
graS_2
Sensor histidine kinase GraS.
 
 0.880
barA_2
Signal transduction histidine-protein kinase BarA.
 
 0.858
phoR_1
Alkaline phosphatase synthesis sensor protein PhoR.
 
 0.817
arlS_1
Signal transduction histidine-protein kinase ArlS.
 
 0.810
walK_1
Sensor protein kinase WalK.
 
 0.792
todS_1
Sensor histidine kinase TodS.
 
 0.790
todS_2
Sensor histidine kinase TodS.
 
 0.786
rpfC_2
Sensory/regulatory protein RpfC.
 
 0.785
rpfC_1
Sensory/regulatory protein RpfC.
 
 0.779
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.