Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
graS_1Sensor histidine kinase GraS. (337 aa)    
Predicted Functional Partners:
graR_1
Response regulator protein GraR.
 
 0.971
bceB
Bacitracin export permease protein BceB.
 
 
 
 0.940
yxdL
ABC transporter ATP-binding protein YxdL.
 
 
 0.938
yxdM
ABC transporter permease protein YxdM.
 
 
 
 0.916
bceA
Bacitracin export ATP-binding protein BceA.
 
 
 0.914
graR_2
Response regulator protein GraR.
 
 0.876
barA_2
Signal transduction histidine-protein kinase BarA.
 
 0.842
zraS_2
Sensor protein ZraS.
 
 0.656
zraS_4
Sensor protein ZraS.
 
 0.651
walR_5
Transcriptional regulatory protein WalR.
  
 0.644
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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