Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yxdLABC transporter ATP-binding protein YxdL. (255 aa)    
Predicted Functional Partners:
bceB
Bacitracin export permease protein BceB.
 
 0.994
yxdM
ABC transporter permease protein YxdM.
 
 0.975
graS_1
Sensor histidine kinase GraS.
 
 
 0.938
graS_2
Sensor histidine kinase GraS.
 
 
 0.914
macB_1
Macrolide export ATP-binding/permease protein MacB.
 0.910
macB_4
Macrolide export ATP-binding/permease protein MacB.
 0.835
AQR93454.1
FtsX-like permease family protein.
 
 0.779
ytrF
ABC transporter permease YtrF precursor.
 
 0.771
AQR96884.1
FtsX-like permease family protein.
  
 0.755
AQR93551.1
Macrolide transporter ATP-binding /permease protein.
  
 0.737
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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