STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfG_7Cyclic di-GMP phosphodiesterase response regulator RpfG. (587 aa)    
Predicted Functional Partners:
cph2_3
Phytochrome-like protein cph2.
 
  
 0.755
barA_2
Signal transduction histidine-protein kinase BarA.
 
  
 0.728
cph2_1
Phytochrome-like protein cph2.
 
 
 0.714
pheA
P-protein.
  
 
 0.697
rpfC_2
Sensory/regulatory protein RpfC.
  
 0.685
rpfC_1
Sensory/regulatory protein RpfC.
  
 0.680
cph2_2
Phytochrome-like protein cph2.
 
 
0.655
gmr_4
Cyclic di-GMP phosphodiesterase Gmr.
0.633
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.622
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.622
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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