STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94300.1Hypothetical protein. (45 aa)    
Predicted Functional Partners:
albA_1
Antilisterial bacteriocin subtilosin biosynthesis protein AlbA.
 
 
 
 0.969
chuR
Anaerobic sulfatase-maturating enzyme.
 
 
 
 0.781
AQR98088.1
Hypothetical protein; Anaerobic sulfatase-maturating enzyme homolog YdeM.
 
 
 
 0.779
AQR97482.1
Hypothetical protein; Anaerobic sulfatase-maturating enzyme homolog YdeM.
 
 
 
 0.773
murP
PTS system N-acetylmuramic acid-specific EIIBC component.
       0.568
dnaC_1
DNA replication protein DnaC.
  
     0.568
hemZ
Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ.
 
     0.559
AQR95970.1
Hypothetical protein.
  
     0.552
sspC2_1
Small, acid-soluble spore protein C2.
  
     0.518
alkA
DNA-3-methyladenine glycosylase.
  
     0.515
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.