STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
albA_1Antilisterial bacteriocin subtilosin biosynthesis protein AlbA. (453 aa)    
Predicted Functional Partners:
AQR94300.1
Hypothetical protein.
 
 
   0.956
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
    0.589
trmK
tRNA (adenine(22)-N(1))-methyltransferase.
  
     0.586
speA_1
Arginine decarboxylase.
 
     0.578
AQR93959.1
Hypothetical protein.
  
     0.549
rpmF
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
    0.511
dnaC_1
DNA replication protein DnaC.
  
     0.505
hemZ
Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ.
 
     0.486
alkA
DNA-3-methyladenine glycosylase.
 
     0.483
speA_2
Arginine decarboxylase.
 
     0.482
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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