Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lsrAAutoinducer 2 import ATP-binding protein LsrA. (273 aa)    
Predicted Functional Partners:
AQR94316.1
Beta-methylgalactoside transporter inner membrane component.
 
 
 0.991
AQR94317.1
Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.991
mglA_1
Galactose/methyl galactoside import ATP-binding protein MglA.
    
0.983
tmpC_1
Membrane lipoprotein TmpC precursor.
 
 
 0.971
AQR97121.1
Branched-chain amino acid transport system / permease component.
 
 
 0.964
AQR97122.1
Beta-methylgalactoside transporter inner membrane component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.962
tmpC_2
Membrane lipoprotein TmpC precursor.
 
 
 0.949
lptB_2
Lipopolysaccharide export system ATP-binding protein LptB.
 
     
0.893
artM_4
Arginine transport ATP-binding protein ArtM.
 
     
0.824
artM_2
Arginine transport ATP-binding protein ArtM.
 
     
0.814
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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