STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
mta_2HTH-type transcriptional activator mta. (386 aa)    
Predicted Functional Partners:
fdtB
dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.765
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
    
 0.681
ispA
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.584
hepT
Heptaprenyl diphosphate synthase component 2; Belongs to the FPP/GGPP synthase family.
  
 0.584
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
    
 0.561
grsB
Gramicidin S synthase 2.
    
 0.549
arnB
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.502
AQR96122.1
Hypothetical protein.
  
  
 0.459
AQR95637.1
Hypothetical protein.
  
     0.458
mbtB
Phenyloxazoline synthase MbtB.
    
 0.448
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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