STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
draGADP-ribosyl-[dinitrogen reductase] glycohydrolase. (395 aa)    
Predicted Functional Partners:
ymdB
O-acetyl-ADP-ribose deacetylase.
   
 0.861
kptA
RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
 
   
 0.618
AQR95550.1
Hypothetical protein.
   
   0.610
AQR98123.1
Phage portal protein.
   
   0.610
AQR95882.1
Hypothetical protein.
 
     0.598
AQR96403.1
Hypothetical protein.
 
     0.590
glnB_1
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.488
glnB_2
Nitrogen regulatory protein P-II.
   
 
 0.488
glnB_3
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.488
glnB_4
Nitrogen regulatory protein P-II.
   
 
 0.488
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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