STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mntH_1Divalent metal cation transporter MntH. (413 aa)    
Predicted Functional Partners:
AQR94359.1
Magnesium transporter MgtE.
 
  
 0.935
AQR94360.1
Hypothetical protein.
       0.727
kipA
KipI antagonist.
 
  
 0.589
kipI
Kinase A inhibitor.
 
  
 0.583
znuB
High-affinity zinc uptake system membrane protein ZnuB.
  
  
 0.556
AQR96451.1
Hypothetical protein; Belongs to the D-glutamate cyclase family.
  
  
 0.544
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
  
 0.542
AQR96122.1
Hypothetical protein.
  
  
 0.436
AQR93065.1
Calcium-transporting ATPase.
   
 0.422
yoaB
Calcium-transporting ATPase 1.
   
 0.422
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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