STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94371.1Periplasmic [NiFeSe] hydrogenase small subunit precursor. (291 aa)    
Predicted Functional Partners:
AQR94372.1
Periplasmic [NiFeSe] hydrogenase large subunit.
 
 0.996
AQR96520.1
Periplasmic [NiFeSe] hydrogenase large subunit.
 
 0.987
AQR94373.1
Hydrogenase 2 maturation endopeptidase.
 
 
 0.972
hyaD
Hydrogenase 1 maturation protease.
 
 
 0.904
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.875
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.875
hypF
Carbamoyltransferase HypF.
 
 
 
 0.853
hypD
Hydrogenase isoenzymes formation protein HypD.
 
  
 0.845
hybG
Hydrogenase-2 operon protein HybG.
 
 
 0.841
hypE
Hydrogenase isoenzymes formation protein HypE.
 
   
 0.838
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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