STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94404.1Putative ABC transporter ATP-binding protein. (609 aa)    
Predicted Functional Partners:
msbA
Lipid A export ATP-binding/permease protein MsbA.
 
    
0.880
AQR94402.1
Pheromone autoinducer 2 transporter.
       0.639
lagD
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
 
0.638
glnQ_1
Glutamine transport ATP-binding protein GlnQ.
 
     
0.614
grsB
Gramicidin S synthase 2.
  
  
 0.559
pgsA_2
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.536
AQR96122.1
Hypothetical protein.
  
 
 0.525
cydD
ATP-binding/permease protein CydD.
 
 
 
0.458
AQR94400.1
Hypothetical protein.
       0.450
AQR96065.1
Putative ABC transporter ATP-binding protein.
     
0.433
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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