STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhF_1Putative ABC transporter ATP-binding protein YbhF. (307 aa)    
Predicted Functional Partners:
AQR94439.1
ABC-2 family transporter protein.
 
 0.982
AQR93184.1
ABC-2 family transporter protein.
  
 0.852
AQR94440.1
Bacterial regulatory protein, tetR family.
 
  
 0.810
AQR94169.1
ABC-2 family transporter protein.
  
 0.779
yxdL
ABC transporter ATP-binding protein YxdL.
 
0.773
bceA
Bacitracin export ATP-binding protein BceA.
 
 
0.768
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
     
 0.668
folA_1
Dihydrofolate reductase.
   
  
 0.647
folA_2
Dihydrofolate reductase.
   
  
 0.647
dhfrIII
Dihydrofolate reductase type 3; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
   
  
 0.647
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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