Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR94493.1Phage tail collar domain protein. (225 aa)    
Predicted Functional Partners:
AQR94496.1
Acetyltransferase (GNAT) family protein.
 
     0.863
AQR94494.1
Phage tail collar domain protein.
 
    
0.541
AQR93523.1
Hypothetical protein.
  
  
 0.529
AQR98103.1
Hypothetical protein.
  
  
 0.529
AQR93487.1
Hypothetical protein.
  
    0.521
AQR93515.1
Hypothetical protein.
  
  
 0.512
AQR98119.1
Phage head-tail joining protein.
  
   0.485
pgl_2
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
 
   0.481
AQR98121.1
Phage capsid family protein.
   
   0.458
AQR95550.1
Hypothetical protein.
  
 
 0.436
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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