STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94495.1Phage tail collar domain protein. (229 aa)    
Predicted Functional Partners:
AQR94496.1
Acetyltransferase (GNAT) family protein.
 
     0.943
inlA_1
internalin-A precursor.
 
     0.615
AQR98119.1
Phage head-tail joining protein.
  
   0.579
AQR98121.1
Phage capsid family protein.
   
 
 0.579
AQR95550.1
Hypothetical protein.
  
 
 0.557
AQR98123.1
Phage portal protein.
  
 
 0.557
AQR94494.1
Phage tail collar domain protein.
 
    
0.542
AQR93487.1
Hypothetical protein.
  
    0.508
pgl_2
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
 
   0.493
AQR93523.1
Hypothetical protein.
  
  
 0.492
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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