Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lytA_6Autolysin. (619 aa)    
Predicted Functional Partners:
toxB_1
Toxin B.
 
 
 0.861
lytA_11
Autolysin.
 
     0.763
AQR93800.1
Putative cell wall binding repeat protein.
 
     0.761
AQR97179.1
Cadherin-like beta sandwich domain protein.
  
     0.741
lytA_9
Autolysin.
 
     0.650
AQR95592.1
Putative cell wall binding repeat protein.
 
     0.639
inlA_1
internalin-A precursor.
     
 0.632
rrrD
Lysozyme RrrD.
  
     0.464
AQR94496.1
Acetyltransferase (GNAT) family protein.
  
    0.463
AQR96483.1
Hypothetical protein.
  
 
 0.447
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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