Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQR94504.1DNA-binding transcriptional repressor AcrR. (192 aa)    
Predicted Functional Partners:
pdhC
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex.
     
 0.628
ubiE_1
Demethylmenaquinone methyltransferase.
 
 
 
 0.611
AQR94631.1
Hypothetical protein.
 
     0.510
AQR96353.1
Hypothetical protein.
  
     0.459
irtA
Iron import ATP-binding/permease protein IrtA.
 
     0.452
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.446
ykoD
Putative HMP/thiamine import ATP-binding protein YkoD.
 
     0.445
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
  
     0.444
AQR96352.1
Putative multidrug export ATP-binding/permease protein.
  
     0.414
AQR94635.1
Putative ABC transporter ATP-binding protein.
 
     0.404
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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