STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94524.1Iron-sulfur flavoprotein. (256 aa)    
Predicted Functional Partners:
sgcG_9
2-amino-4-deoxychorismate dehydrogenase.
  
     0.758
sgcG_10
2-amino-4-deoxychorismate dehydrogenase.
  
     0.751
AQR94525.1
DNA-binding transcriptional regulator EnvR.
 
     0.725
sgcG_7
2-amino-4-deoxychorismate dehydrogenase.
  
     0.621
frp
NADPH-flavin oxidoreductase.
  
 
 0.532
AQR95656.1
Flavodoxin.
 
     0.528
AQR94881.1
Ferredoxin.
 
     0.518
AQR94487.1
Helix-turn-helix domain protein.
  
     0.513
AQR94565.1
Hypothetical protein.
  
     0.502
AQR93516.1
LysM domain/BON superfamily protein.
  
  
 0.501
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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