STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94526.1Hypothetical protein. (173 aa)    
Predicted Functional Partners:
AQR94527.1
UDP-glucose 4-epimerase.
 
     0.885
AQR92976.1
Hypothetical protein.
  
     0.691
kstR2_1
HTH-type transcriptional repressor KstR2.
   
    0.681
AQR96857.1
Hypothetical protein.
  
     0.632
bm3R1_1
HTH-type transcriptional repressor Bm3R1.
   
    0.600
padR
Transcriptional regulator PadR-like family protein.
  
   
 0.551
AQR94529.1
Rhodanese-like domain protein.
  
   
 0.514
AQR97584.1
Hypothetical protein.
  
    0.481
AQR94440.1
Bacterial regulatory protein, tetR family.
  
     0.480
ycdT_1
Putative diguanylate cyclase YcdT.
  
 
 0.426
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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