STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
flr_3Flavoredoxin. (190 aa)    
Predicted Functional Partners:
yybR_4
Putative HTH-type transcriptional regulator YybR.
       0.556
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.549
fbiB
Coenzyme F420:L-glutamate ligase.
 
 
 0.540
AQR94571.1
Ferredoxin.
 
 
 0.530
nfrA
NADPH-dependent oxidoreductase.
 
 
 0.527
rsxB_4
Electron transport complex subunit RsxB.
 
 
 0.520
AQR93805.1
Putative NAD(P)H nitroreductase.
 
 
 0.511
AQR94545.1
Rifampin ADP-ribosyl transferase.
       0.502
frp
NADPH-flavin oxidoreductase.
 
 
 0.497
AQR96424.1
Putative NAD(P)H nitroreductase.
 
 
 0.491
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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