STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94566.1DNA-binding transcriptional repressor AcrR. (194 aa)    
Predicted Functional Partners:
AQR94519.1
Hypothetical protein.
  
     0.773
AQR94465.1
DNA-binding transcriptional regulator EnvR.
  
     0.772
AQR94721.1
Hypothetical protein.
  
     0.770
AQR93423.1
DNA-binding transcriptional repressor FabR.
  
     0.767
AQR94694.1
DNA-binding transcriptional repressor FabR.
  
     0.635
bepG
Efflux pump membrane transporter BepG.
     
 0.537
emrK_3
Putative multidrug resistance protein EmrK.
     
 0.511
pbp
Beta-lactam-inducible penicillin-binding protein.
  
  
 0.504
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
   
  
 0.423
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.418
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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