STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiRInner membrane protein YbiR. (394 aa)    
Predicted Functional Partners:
AQR95906.1
Hypothetical protein.
  
 
 0.713
hosA
Transcriptional regulator HosA.
       0.712
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
    0.643
spxA
Regulatory protein Spx; Belongs to the ArsC family.
 
  
 0.591
cpdA_1
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA.
 
     0.587
AQR95728.1
Methionine gamma-lyase.
  
  
 0.563
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
    0.530
mgsR
Regulatory protein MgsR; Belongs to the ArsC family.
    
 0.519
prs_4
Ribose-phosphate pyrophosphokinase.
  
  
 0.516
purL
Phosphoribosylformylglycinamidine synthase.
  
    0.449
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.