Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR94585.1Hypothetical protein. (219 aa)    
Predicted Functional Partners:
yhdN_2
General stress protein 69.
  
     0.594
AQR94584.1
Hypothetical protein.
 
     0.574
AQR94588.1
Hypothetical protein.
  
     0.536
AQR95864.1
Putative acyltransferase.
  
     0.503
AQR94801.1
Hypothetical protein.
  
     0.496
ypeA_2
Acetyltransferase YpeA.
  
     0.485
AQR97481.1
Hypothetical protein.
  
     0.454
AQR94586.1
Threonine and homoserine efflux system.
       0.450
AQR95355.1
FMN-binding domain protein.
  
     0.403
AQR96319.1
Hypothetical protein; TfoX C-terminal domain.
 
     0.402
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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