STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94602.1Fructuronate transporter. (464 aa)    
Predicted Functional Partners:
ydiF_1
Acetate CoA-transferase YdiF; Belongs to the 3-oxoacid CoA-transferase family.
 
     0.760
phaJ
(R)-specific enoyl-CoA hydratase.
 
     0.713
garK
Glycerate 2-kinase; Belongs to the glycerate kinase type-1 family.
  
  
 0.543
glpK_2
Glycerol kinase; Belongs to the FGGY kinase family.
  
  
 0.476
xylB_1
Xylulose kinase.
  
  
 0.476
rhaB
Rhamnulokinase.
  
  
 0.476
fucK
L-fuculokinase.
  
  
 0.476
xylB_2
Xylulose kinase; Belongs to the FGGY kinase family.
  
  
 0.476
AQR94600.1
Limonene hydroxylase.
 
   
 0.469
ydiF_2
Acetate CoA-transferase YdiF; Belongs to the 3-oxoacid CoA-transferase family.
 
     0.463
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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