STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bm3R1_1HTH-type transcriptional repressor Bm3R1. (169 aa)    
Predicted Functional Partners:
AQR94526.1
Hypothetical protein.
   
    0.600
atoD_1
Acetate CoA-transferase subunit alpha.
     
 0.494
ctfB_1
Butyrate--acetoacetate CoA-transferase subunit B.
       0.478
acrR
HTH-type transcriptional regulator AcrR.
  
     0.448
qacR
HTH-type transcriptional regulator QacR.
  
     0.437
kstR2_2
HTH-type transcriptional repressor KstR2.
  
     0.432
AQR96760.1
Bacterial regulatory protein, tetR family.
  
     0.425
tetR_1
Tetracycline repressor protein class G.
  
     0.424
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.418
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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