Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
btr_1HTH-type transcriptional activator Btr. (323 aa)    
Predicted Functional Partners:
AQR94631.1
Hypothetical protein.
 
    0.751
AQR94635.1
Putative ABC transporter ATP-binding protein.
 
  
 0.745
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
 
     0.742
araC_1
Arabinose operon regulatory protein.
  
     0.734
melR_3
Melibiose operon regulatory protein.
 
 
 
 0.724
AQR94636.1
Putative multidrug export ATP-binding/permease protein.
 
  
 0.723
btr_3
HTH-type transcriptional activator Btr.
  
     0.723
rhaS_7
HTH-type transcriptional activator RhaS.
  
     0.723
cdhR
HTH-type transcriptional regulator CdhR.
 
 
 
 0.701
rhaS_5
HTH-type transcriptional activator RhaS.
  
     0.695
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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