STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD2Phage integrase family protein. (95 aa)    
Predicted Functional Partners:
AQR94675.1
Hypothetical protein.
     
 0.774
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
      
 0.644
tmoS_1
Sensor histidine kinase TmoS.
      
 0.639
lgrE_3
Linear gramicidin dehydrogenase LgrE.
      
 0.636
sfp_3
4'-phosphopantetheinyl transferase sfp; Belongs to the P-Pant transferase superfamily.
      
 0.636
yqjA
Inner membrane protein YqjA.
      
 0.636
acpP_2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.619
acpA
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
    
 
 0.619
AQR93217.1
Glutathionylspermidine synthase.
  
     0.582
AQR96551.1
Hypothetical protein.
  
     0.555
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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