Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xerD2Phage integrase family protein. (95 aa)    
Predicted Functional Partners:
AQR94675.1
Hypothetical protein.
     
 0.763
tmoS_1
Sensor histidine kinase TmoS.
      
 0.634
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
      
 0.630
lgrE_3
Linear gramicidin dehydrogenase LgrE.
      
 0.630
sfp_3
4'-phosphopantetheinyl transferase sfp; Belongs to the P-Pant transferase superfamily.
      
 0.630
yqjA
Inner membrane protein YqjA.
      
 0.630
AQR93217.1
Glutathionylspermidine synthase.
  
     0.582
AQR96551.1
Hypothetical protein.
  
     0.555
AQR94429.1
Hypothetical protein; Glycosyltransferase family 28 C-terminal domain.
  
     0.536
prs_2
Ribose-phosphate pyrophosphokinase.
   
    0.531
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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