STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsrA_1Putative transport protein HsrA. (459 aa)    
Predicted Functional Partners:
AQR94715.1
Putative DMT superfamily transporter inner membrane protein.
     
 0.738
emrK_2
Putative multidrug resistance protein EmrK.
 
 0.690
emrA_1
Multidrug export protein EmrA.
 
 0.631
emrA_2
Multidrug export protein EmrA.
 
 0.593
mhqR_1
HTH-type transcriptional regulator MhqR.
  
  
 0.495
emrK_4
Putative multidrug resistance protein EmrK.
 
 0.470
AQR94821.1
Multidrug efflux system protein MdtL.
  
   
 0.460
pheA
P-protein.
  
 
 0.454
AQR97520.1
Putative efflux pump membrane fusion protein.
 
 0.417
AQR96122.1
Hypothetical protein.
  
  
 0.409
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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