Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yesRUnsaturated rhamnogalacturonyl hydrolase YesR. (368 aa)    
Predicted Functional Partners:
rhaS_5
HTH-type transcriptional activator RhaS.
     
 0.777
rhgT
Rhamnogalacturonan acetylesterase RhgT.
 
 
 0.773
glcU
Glucose uptake protein GlcU.
       0.773
kduI1
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 1; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.749
nfo_3
Endonuclease 4.
 
    0.738
pemA_1
Pectinesterase A precursor.
 
  
 0.719
AQR93581.1
Xylose isomerase-like TIM barrel.
 
    0.715
AQR94733.1
Hypothetical protein.
 
   
 0.713
lacE_3
Lactose-binding protein precursor.
  
  
 0.707
pemA_2
Pectinesterase A precursor.
 
  
 0.707
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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