Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glcUGlucose uptake protein GlcU. (288 aa)    
Predicted Functional Partners:
rhaS_5
HTH-type transcriptional activator RhaS.
       0.773
yesR
Unsaturated rhamnogalacturonyl hydrolase YesR.
       0.773
AQR98031.1
Hypothetical protein.
  
     0.719
AQR94402.1
Pheromone autoinducer 2 transporter.
  
     0.717
lacE_3
Lactose-binding protein precursor.
       0.693
bioB_1
Biotin synthase.
  
    0.605
bioB_2
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
    0.605
pstS1
Phosphate-binding protein PstS 1 precursor.
 
   
 0.565
AQR94733.1
Hypothetical protein.
       0.499
araP_1
L-arabinose transport system permease protein AraP.
       0.499
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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