Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQR94733.1Hypothetical protein. (826 aa)    
Predicted Functional Partners:
araP_1
L-arabinose transport system permease protein AraP.
  
  
 0.784
araQ_4
L-arabinose transport system permease protein AraQ.
       0.780
lacE_3
Lactose-binding protein precursor.
 
     0.728
yesR
Unsaturated rhamnogalacturonyl hydrolase YesR.
 
   
 0.713
AQR93672.1
Thermophilic serine proteinase precursor.
  
 
 0.695
yesO_3
Putative ABC transporter substrate-binding protein YesO.
 
     0.556
yesO_2
Putative ABC transporter substrate-binding protein YesO.
 
     0.514
xynZ_2
Endo-1,4-beta-xylanase Z precursor.
     
 0.513
xynY_1
Endo-1,4-beta-xylanase Y precursor.
     
 0.513
AQR93292.1
Hypothetical protein.
  
 0.504
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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