Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AQR94747.1Bacteriohemerythrin. (134 aa)    
Predicted Functional Partners:
AQR94708.1
Bacteriohemerythrin.
  
     0.773
fprA2
Flavo-diiron protein FprA2.
  
  
 0.514
fprA1_1
Flavo-diiron protein FprA1.
  
  
 0.514
pkn1
Serine/threonine-protein kinase pkn1.
 
     0.504
fprA1_2
Flavo-diiron protein FprA1.
  
  
 0.467
fprA
Nitric oxide reductase.
  
  
 0.467
AQR96362.1
Flavodoxin.
  
  
 0.467
AQR94748.1
Hypothetical protein.
       0.408
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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