STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
drrA_2Daunorubicin/doxorubicin resistance ATP-binding protein DrrA. (324 aa)    
Predicted Functional Partners:
AQR94752.1
ABC-2 type transporter.
 
 
 0.972
AQR94750.1
ABC-2 type transporter.
 
 
 0.971
AQR93184.1
ABC-2 family transporter protein.
  
 0.779
AQR94169.1
ABC-2 family transporter protein.
  
 0.779
AQR94439.1
ABC-2 family transporter protein.
  
 0.779
AQR94754.1
Helix-turn-helix domain protein.
 
   
 0.737
ybhS
Inner membrane transport permease YbhS.
 
 
 0.566
ybhR
Inner membrane transport permease YbhR.
  
 
 0.566
cysS_2
cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   
 0.563
rsmA_1
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.561
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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