STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94754.1Helix-turn-helix domain protein. (316 aa)    
Predicted Functional Partners:
AQR94750.1
ABC-2 type transporter.
 
     0.885
AQR94752.1
ABC-2 type transporter.
 
     0.882
drrA_2
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
   
 0.737
yihX
alpha-D-glucose-1-phosphate phosphatase YihX.
       0.682
AQR96023.1
Tetratricopeptide repeat protein.
  
  
 0.606
cdr_2
Coenzyme A disulfide reductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.537
AQR94947.1
Rubrerythrin.
  
     0.493
yflN
Putative metallo-hydrolase YflN.
     
 0.453
cadA
Cadmium, zinc and cobalt-transporting ATPase.
 
  
 0.445
copA_3
Copper-exporting P-type ATPase A.
  
  
 0.427
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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