STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94765.1Hypothetical protein. (113 aa)    
Predicted Functional Partners:
kduD_2
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
 
 
 0.925
kynB
Kynurenine formamidase.
 
   
 0.875
ctfB_2
Butyrate--acetoacetate CoA-transferase subunit B.
    
 0.766
AQR97213.1
Hypothetical protein.
  
     0.744
AQR97471.1
Hypothetical protein.
  
     0.744
atoD_2
Acetate CoA-transferase subunit alpha.
  
  
 0.734
AQR94771.1
Hypothetical protein.
  
     0.734
kce
3-keto-5-aminohexanoate cleavage enzyme.
 
     0.718
AQR94772.1
Hypothetical protein.
  
     0.613
AQR97202.1
NADPH-dependent FMN reductase.
 
    0.613
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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