Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR94772.1Hypothetical protein. (223 aa)    
Predicted Functional Partners:
AQR94765.1
Hypothetical protein.
  
     0.613
AQR94773.1
Sulfite exporter TauE/SafE.
       0.588
kynB
Kynurenine formamidase.
  
     0.549
AQR94771.1
Hypothetical protein.
 
     0.539
AQR96730.1
NADPH-dependent FMN reductase.
  
     0.448
kce
3-keto-5-aminohexanoate cleavage enzyme.
 
     0.417
AQR97202.1
NADPH-dependent FMN reductase.
  
     0.406
AQR94342.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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