STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94792.1Hypothetical protein. (137 aa)    
Predicted Functional Partners:
rutD_2
Putative aminoacrylate hydrolase RutD.
 
     0.943
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
 
 0.912
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
  
 0.853
AQR97917.1
long-chain-fatty-acid--AMP ligase FadD29.
  
 0.843
grsB
Gramicidin S synthase 2.
 
 
 0.716
AQR96122.1
Hypothetical protein.
  
 0.705
rutD_3
Putative aminoacrylate hydrolase RutD.
  
     0.688
mbtB
Phenyloxazoline synthase MbtB.
 
 
 0.677
lgrD
Linear gramicidin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.656
mmgC
acyl-CoA dehydrogenase.
  
 0.599
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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