Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dmsB_1Anaerobic dimethyl sulfoxide reductase chain B. (198 aa)    
Predicted Functional Partners:
dmsA
Dimethyl sulfoxide reductase DmsA precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.996
dmsD
Tat proofreading chaperone DmsD.
 
  
 0.928
narB
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.920
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.843
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.843
sfrB_4
NADPH-Fe(3+) oxidoreductase subunit beta.
  
 
 0.749
hndC_1
NADP-reducing hydrogenase subunit HndC.
  
 
 0.743
rsxB_4
Electron transport complex subunit RsxB.
  
 
 0.711
AQR94571.1
Ferredoxin.
  
 
 0.711
AQR96254.1
Ferredoxin-3.
  
 
 0.711
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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