STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmsDTat proofreading chaperone DmsD. (225 aa)    
Predicted Functional Partners:
dmsA
Dimethyl sulfoxide reductase DmsA precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.976
dmsB_1
Anaerobic dimethyl sulfoxide reductase chain B.
 
  
 0.928
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
 
  
 0.549
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
 
  
 0.547
tatAd
Sec-independent protein translocase protein TatAd; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
 
 
 
 0.501
ycdX_1
Putative phosphatase YcdX.
 
 
 0.476
albA_3
Antilisterial bacteriocin subtilosin biosynthesis protein AlbA.
  
     0.442
yoaH_2
Putative methyl-accepting chemotaxis protein YoaH.
       0.415
dmsB_2
Anaerobic dimethyl sulfoxide reductase chain B.
 
  
 0.413
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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