STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yehU_1Sensor histidine kinase YehU. (498 aa)    
Predicted Functional Partners:
alsB
D-allose-binding periplasmic protein precursor.
 
 
 0.970
yesS_1
HTH-type transcriptional regulator YesS.
 
   
 0.943
lytR
Sensory transduction protein LytR.
 
  
 0.846
yehT
Transcriptional regulatory protein YehT.
 
  
 0.764
ypdB
Transcriptional regulatory protein YpdB.
 
  
 0.748
AQR94847.1
Acetylornithine deacetylase.
 
     0.740
AQR98182.1
Putative response regulatory protein.
 
  
 0.704
AQR97147.1
Putative response regulatory protein.
 
  
 0.702
AQR96737.1
Putative response regulatory protein.
 
  
 0.687
AQR93681.1
Putative response regulatory protein.
 
  
 0.686
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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