Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (439 aa)    
Predicted Functional Partners:
xylB_1
Xylulose kinase.
 
 
 0.999
xylB_2
Xylulose kinase; Belongs to the FGGY kinase family.
 
 
 0.990
xylB4
Non-reducing end alpha-L-arabinofuranosidase BoGH43A precursor; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.949
xylB2
Non-reducing end alpha-L-arabinofuranosidase BoGH43B precursor; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.944
fruA_2
PTS system fructose-specific EIIABC component.
   
 
 0.942
xynD_2
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
  
 
 0.914
kdgK_4
2-dehydro-3-deoxygluconokinase.
    
 0.914
kdgK_5
2-dehydro-3-deoxygluconokinase.
    
 0.914
fruA_3
PTS system fructose-specific EIIBC component.
     
 0.911
manP
PTS system mannose-specific EIIBCA component.
     
 0.911
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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