Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AQR94857.1Hypothetical protein. (206 aa)    
Predicted Functional Partners:
AQR94858.1
Hypothetical protein; L-fucose isomerase, C-terminal domain.
 
   
 0.909
xylB_1
Xylulose kinase.
  
  
 0.854
rhaB
Rhamnulokinase.
 
  
 0.704
glpK_2
Glycerol kinase; Belongs to the FGGY kinase family.
  
  
 0.666
xylB_2
Xylulose kinase; Belongs to the FGGY kinase family.
  
  
 0.666
fliU_4
Flagellar biosynthetic protein FliU.
  
     0.598
fliU_2
Flagellar biosynthetic protein FliU.
  
     0.581
fucK
L-fuculokinase.
  
  
 0.563
AQR97274.1
Hypothetical protein.
 
   
 0.480
tkt_1
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
       0.458
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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