STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR94861.1MarR family protein. (157 aa)    
Predicted Functional Partners:
tetA_2
Tetracycline resistance protein, class C.
 
   
 0.741
hxlR_5
HTH-type transcriptional activator HxlR.
  
  
 0.673
slyA_3
Transcriptional regulator SlyA.
  
     0.587
opuCC
Carnitine transport binding protein OpuCC precursor.
  
  
 0.495
sgcG_6
2-amino-4-deoxychorismate dehydrogenase.
  
    0.461
mepA_2
Multidrug export protein MepA.
 
  
 0.426
yfcE_2
Phosphodiesterase YfcE.
  
    0.413
metQ_1
Methionine-binding lipoprotein MetQ precursor; Belongs to the nlpA lipoprotein family.
   
    0.408
metQ_3
D-methionine-binding lipoprotein MetQ precursor; Belongs to the nlpA lipoprotein family.
   
    0.408
AQR96484.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.