STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tetA_2Tetracycline resistance protein, class C. (411 aa)    
Predicted Functional Partners:
AQR94861.1
MarR family protein.
 
   
 0.741
AQR94863.1
Alpha/beta hydrolase family protein.
 
    0.519
gap
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 
  
 0.459
pheA
P-protein.
  
 
 0.454
AQR93255.1
Pentapeptide repeat protein.
   
  
 0.441
slyA_3
Transcriptional regulator SlyA.
  
   
 0.431
hxlR_5
HTH-type transcriptional activator HxlR.
       0.414
AQR96122.1
Hypothetical protein.
  
  
 0.409
AQR94864.1
Metallo-beta-lactamase L1 precursor.
     
 0.403
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.